Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4QC-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4QC-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4QC-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4QC-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72520938 total, 53998 skipped (flags/unmapped)
Fragments: 36353182 total (36079395 tlen-paired, 2562 hash-paired, 358 singletons, 14907 discordant, 255960 orphans, 8447 too large [>5000 bp], 15411002 duplicates)
Reads: 78585499 total, 49476 skipped (flags/unmapped)
Fragments: 39393679 total (39111277 tlen-paired, 2114 hash-paired, 396 singletons, 10983 discordant, 268909 orphans, 8985 too large [>5000 bp], 16355739 duplicates)
Reads: 87908445 total, 82634 skipped (flags/unmapped)
Fragments: 44151406 total (43424459 tlen-paired, 3108 hash-paired, 338 singletons, 137962 discordant, 585539 orphans, 54438 too large [>5000 bp], 18858822 duplicates)
Reads: 87026157 total, 51550 skipped (flags/unmapped)
Fragments: 43627464 total (43285256 tlen-paired, 5873 hash-paired, 303 singletons, 16052 discordant, 319980 orphans, 19981 too large [>5000 bp], 18599774 duplicates)