Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eeB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eeB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eeB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eeB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81507314 total, 64514 skipped (flags/unmapped)
Fragments: 40899741 total (40497847 tlen-paired, 2987 hash-paired, 339 singletons, 17215 discordant, 381353 orphans, 12505 too large [>5000 bp], 17699326 duplicates)
Reads: 86266927 total, 56198 skipped (flags/unmapped)
Fragments: 43292732 total (42877559 tlen-paired, 3400 hash-paired, 538 singletons, 11980 discordant, 399255 orphans, 12529 too large [>5000 bp], 18311294 duplicates)
Reads: 95713833 total, 61937 skipped (flags/unmapped)
Fragments: 48038402 total (47544557 tlen-paired, 3767 hash-paired, 323 singletons, 18512 discordant, 471243 orphans, 23329 too large [>5000 bp], 20807061 duplicates)
Reads: 97414477 total, 101760 skipped (flags/unmapped)
Fragments: 49040751 total (47847532 tlen-paired, 2554 hash-paired, 411 singletons, 231428 discordant, 958826 orphans, 95226 too large [>5000 bp], 21178834 duplicates)