Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_NZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_NZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_NZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_NZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65120365 total, 44696 skipped (flags/unmapped)
Fragments: 32650150 total (32369086 tlen-paired, 2377 hash-paired, 203 singletons, 13232 discordant, 265252 orphans, 20412 too large [>5000 bp], 13144256 duplicates)
Reads: 64716714 total, 40426 skipped (flags/unmapped)
Fragments: 32450022 total (32195347 tlen-paired, 1942 hash-paired, 338 singletons, 10987 discordant, 241408 orphans, 8995 too large [>5000 bp], 12631194 duplicates)
Reads: 60105795 total, 49091 skipped (flags/unmapped)
Fragments: 30137313 total (29884672 tlen-paired, 2572 hash-paired, 277 singletons, 15143 discordant, 234649 orphans, 8502 too large [>5000 bp], 12074292 duplicates)
Reads: 72061184 total, 70213 skipped (flags/unmapped)
Fragments: 36199451 total (35565437 tlen-paired, 2720 hash-paired, 273 singletons, 121537 discordant, 509484 orphans, 50913 too large [>5000 bp], 14618427 duplicates)