Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_665-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_665-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_665-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_665-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93367312 total, 58627 skipped (flags/unmapped)
Fragments: 46831200 total (46436382 tlen-paired, 3671 hash-paired, 509 singletons, 11704 discordant, 378934 orphans, 12864 too large [>5000 bp], 20178364 duplicates)
Reads: 87895112 total, 67123 skipped (flags/unmapped)
Fragments: 44076220 total (43700264 tlen-paired, 3674 hash-paired, 440 singletons, 15935 discordant, 355907 orphans, 15948 too large [>5000 bp], 19504030 duplicates)
Reads: 93382730 total, 59965 skipped (flags/unmapped)
Fragments: 46843113 total (46411316 tlen-paired, 5390 hash-paired, 399 singletons, 13662 discordant, 412346 orphans, 24642 too large [>5000 bp], 20678288 duplicates)
Reads: 103524826 total, 94381 skipped (flags/unmapped)
Fragments: 52068874 total (50956897 tlen-paired, 4476 hash-paired, 440 singletons, 219592 discordant, 887469 orphans, 90303 too large [>5000 bp], 23000149 duplicates)