Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6ZL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ZL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ZL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ZL-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89031857 total, 68450 skipped (flags/unmapped)
Fragments: 44678451 total (44236854 tlen-paired, 3355 hash-paired, 393 singletons, 15549 discordant, 422300 orphans, 14599 too large [>5000 bp], 21227751 duplicates)
Reads: 96842577 total, 59858 skipped (flags/unmapped)
Fragments: 48613722 total (48129557 tlen-paired, 3035 hash-paired, 457 singletons, 11125 discordant, 469548 orphans, 12640 too large [>5000 bp], 22442616 duplicates)
Reads: 97544597 total, 62603 skipped (flags/unmapped)
Fragments: 48965935 total (48480007 tlen-paired, 3159 hash-paired, 356 singletons, 12995 discordant, 469418 orphans, 9949 too large [>5000 bp], 23389361 duplicates)
Reads: 108368683 total, 101850 skipped (flags/unmapped)
Fragments: 54588499 total (53157108 tlen-paired, 3459 hash-paired, 447 singletons, 290733 discordant, 1136752 orphans, 113517 too large [>5000 bp], 25934321 duplicates)