Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4II-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4II-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4II-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_4II-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102107322 total, 76664 skipped (flags/unmapped)
Fragments: 51171449 total (50808862 tlen-paired, 3729 hash-paired, 413 singletons, 21440 discordant, 337005 orphans, 12589 too large [>5000 bp], 21768111 duplicates)
Reads: 107326537 total, 64371 skipped (flags/unmapped)
Fragments: 53786441 total (53429979 tlen-paired, 3862 hash-paired, 515 singletons, 14474 discordant, 337611 orphans, 13705 too large [>5000 bp], 22380514 duplicates)
Reads: 108671919 total, 68587 skipped (flags/unmapped)
Fragments: 54470390 total (54046027 tlen-paired, 4555 hash-paired, 366 singletons, 19066 discordant, 400376 orphans, 31647 too large [>5000 bp], 23196686 duplicates)
Reads: 120064715 total, 104595 skipped (flags/unmapped)
Fragments: 60269057 total (59367898 tlen-paired, 3346 hash-paired, 426 singletons, 172325 discordant, 725062 orphans, 73747 too large [>5000 bp], 25765486 duplicates)