Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dcz-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dcz-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dcz-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dcz-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 100282038 total, 64892 skipped (flags/unmapped)
Fragments: 50257649 total (49908354 tlen-paired, 3640 hash-paired, 578 singletons, 19481 discordant, 325596 orphans, 14011 too large [>5000 bp], 20401094 duplicates)
Reads: 93104146 total, 82453 skipped (flags/unmapped)
Fragments: 46659461 total (46295634 tlen-paired, 5453 hash-paired, 406 singletons, 28007 discordant, 329961 orphans, 16569 too large [>5000 bp], 19341379 duplicates)
Reads: 100528798 total, 68620 skipped (flags/unmapped)
Fragments: 50385047 total (49998462 tlen-paired, 5826 hash-paired, 367 singletons, 22853 discordant, 357539 orphans, 23995 too large [>5000 bp], 21024024 duplicates)
Reads: 111010270 total, 108209 skipped (flags/unmapped)
Fragments: 55703118 total (54945108 tlen-paired, 3581 hash-paired, 437 singletons, 138300 discordant, 615692 orphans, 55977 too large [>5000 bp], 23368308 duplicates)