Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0C8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0C8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0C8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0C8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73604034 total, 56826 skipped (flags/unmapped)
Fragments: 36895590 total (36605555 tlen-paired, 3074 hash-paired, 352 singletons, 18763 discordant, 267846 orphans, 12113 too large [>5000 bp], 14948454 duplicates)
Reads: 78107297 total, 46082 skipped (flags/unmapped)
Fragments: 39153455 total (38871319 tlen-paired, 2362 hash-paired, 410 singletons, 12677 discordant, 266687 orphans, 10701 too large [>5000 bp], 15496229 duplicates)
Reads: 87343623 total, 85391 skipped (flags/unmapped)
Fragments: 43857783 total (43168429 tlen-paired, 2435 hash-paired, 370 singletons, 126935 discordant, 559614 orphans, 51325 too large [>5000 bp], 17957228 duplicates)
Reads: 86587392 total, 50179 skipped (flags/unmapped)
Fragments: 43409931 total (43060449 tlen-paired, 3531 hash-paired, 309 singletons, 18906 discordant, 326736 orphans, 22198 too large [>5000 bp], 17724956 duplicates)