Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_43J-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_43J-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_43J-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_43J-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77122066 total, 45776 skipped (flags/unmapped)
Fragments: 38669541 total (38348452 tlen-paired, 3985 hash-paired, 280 singletons, 15752 discordant, 301072 orphans, 19280 too large [>5000 bp], 15735763 duplicates)
Reads: 65401724 total, 49133 skipped (flags/unmapped)
Fragments: 32785868 total (32526132 tlen-paired, 2925 hash-paired, 308 singletons, 15066 discordant, 241437 orphans, 11300 too large [>5000 bp], 13337795 duplicates)
Reads: 69379684 total, 40915 skipped (flags/unmapped)
Fragments: 34782684 total (34523493 tlen-paired, 1983 hash-paired, 434 singletons, 10473 discordant, 246301 orphans, 10068 too large [>5000 bp], 13729645 duplicates)
Reads: 78175835 total, 68064 skipped (flags/unmapped)
Fragments: 39271436 total (38607094 tlen-paired, 2774 hash-paired, 275 singletons, 124525 discordant, 536768 orphans, 50971 too large [>5000 bp], 16009428 duplicates)