Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_65T-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_65T-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_65T-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_65T-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82413623 total, 60252 skipped (flags/unmapped)
Fragments: 41287726 total (41028088 tlen-paired, 2617 hash-paired, 318 singletons, 15536 discordant, 241167 orphans, 9702 too large [>5000 bp], 17051574 duplicates)
Reads: 90322144 total, 51846 skipped (flags/unmapped)
Fragments: 45256106 total (44978578 tlen-paired, 2815 hash-paired, 305 singletons, 12901 discordant, 261507 orphans, 9949 too large [>5000 bp], 18802441 duplicates)
Reads: 89792653 total, 48677 skipped (flags/unmapped)
Fragments: 44990404 total (44722846 tlen-paired, 2487 hash-paired, 481 singletons, 10953 discordant, 253637 orphans, 8643 too large [>5000 bp], 18201148 duplicates)
Reads: 99321839 total, 85659 skipped (flags/unmapped)
Fragments: 49834097 total (49163971 tlen-paired, 2985 hash-paired, 374 singletons, 128507 discordant, 538260 orphans, 53310 too large [>5000 bp], 20776284 duplicates)