Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cGW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cGW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cGW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cGW-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73950306 total, 56391 skipped (flags/unmapped)
Fragments: 37074690 total (36785565 tlen-paired, 2944 hash-paired, 318 singletons, 13576 discordant, 272287 orphans, 8570 too large [>5000 bp], 15336561 duplicates)
Reads: 80643550 total, 48405 skipped (flags/unmapped)
Fragments: 40430817 total (40130721 tlen-paired, 3328 hash-paired, 338 singletons, 9915 discordant, 286515 orphans, 10182 too large [>5000 bp], 16309008 duplicates)
Reads: 80790361 total, 50278 skipped (flags/unmapped)
Fragments: 40513020 total (40170033 tlen-paired, 3700 hash-paired, 257 singletons, 12234 discordant, 326796 orphans, 20548 too large [>5000 bp], 16845564 duplicates)
Reads: 89310134 total, 81765 skipped (flags/unmapped)
Fragments: 44875928 total (44053553 tlen-paired, 2052 hash-paired, 346 singletons, 162866 discordant, 657111 orphans, 66985 too large [>5000 bp], 18695894 duplicates)