Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FYQ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FYQ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FYQ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FYQ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74829124 total, 57041 skipped (flags/unmapped)
Fragments: 37501675 total (37232094 tlen-paired, 3167 hash-paired, 409 singletons, 16573 discordant, 249432 orphans, 9287 too large [>5000 bp], 14382336 duplicates)
Reads: 80635783 total, 47316 skipped (flags/unmapped)
Fragments: 40412079 total (40141409 tlen-paired, 2236 hash-paired, 440 singletons, 11639 discordant, 256355 orphans, 10552 too large [>5000 bp], 15173667 duplicates)
Reads: 88877733 total, 52925 skipped (flags/unmapped)
Fragments: 44540762 total (44243919 tlen-paired, 2955 hash-paired, 378 singletons, 16638 discordant, 276872 orphans, 10267 too large [>5000 bp], 17186146 duplicates)
Reads: 89291109 total, 83321 skipped (flags/unmapped)
Fragments: 44825688 total (44159148 tlen-paired, 2332 hash-paired, 419 singletons, 123404 discordant, 540385 orphans, 48608 too large [>5000 bp], 17319291 duplicates)