Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_bNS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_bNS-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64297514 total, 56658 skipped (flags/unmapped)
Fragments: 32236634 total (31964798 tlen-paired, 3192 hash-paired, 337 singletons, 14876 discordant, 253431 orphans, 10678 too large [>5000 bp], 12188765 duplicates)
Reads: 68890865 total, 48311 skipped (flags/unmapped)
Fragments: 34545997 total (34235811 tlen-paired, 2732 hash-paired, 285 singletons, 12830 discordant, 294339 orphans, 22592 too large [>5000 bp], 13107263 duplicates)
Reads: 69700701 total, 45127 skipped (flags/unmapped)
Fragments: 34951185 total (34674404 tlen-paired, 1993 hash-paired, 314 singletons, 10232 discordant, 264242 orphans, 8880 too large [>5000 bp], 12915635 duplicates)
Reads: 75909891 total, 82460 skipped (flags/unmapped)
Fragments: 38145603 total (37427626 tlen-paired, 2162 hash-paired, 304 singletons, 138062 discordant, 577449 orphans, 56989 too large [>5000 bp], 14499893 duplicates)