Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7H5-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7H5-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7H5-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7H5-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66656632 total, 51141 skipped (flags/unmapped)
Fragments: 33420917 total (33151153 tlen-paired, 2495 hash-paired, 441 singletons, 11050 discordant, 255778 orphans, 9938 too large [>5000 bp], 12911711 duplicates)
Reads: 70723031 total, 42705 skipped (flags/unmapped)
Fragments: 35463744 total (35190192 tlen-paired, 1947 hash-paired, 410 singletons, 7191 discordant, 264004 orphans, 8626 too large [>5000 bp], 13339229 duplicates)
Reads: 71313075 total, 46151 skipped (flags/unmapped)
Fragments: 35766669 total (35452617 tlen-paired, 3489 hash-paired, 269 singletons, 9623 discordant, 300671 orphans, 17263 too large [>5000 bp], 13807041 duplicates)
Reads: 79358579 total, 77851 skipped (flags/unmapped)
Fragments: 39890345 total (39090961 tlen-paired, 3586 hash-paired, 367 singletons, 160084 discordant, 635347 orphans, 67876 too large [>5000 bp], 15405988 duplicates)