Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3WN-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_3WN-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_3WN-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3WN-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71238316 total, 55532 skipped (flags/unmapped)
Fragments: 35735747 total (35410128 tlen-paired, 2429 hash-paired, 328 singletons, 15378 discordant, 307484 orphans, 9551 too large [>5000 bp], 14890535 duplicates)
Reads: 75690073 total, 46040 skipped (flags/unmapped)
Fragments: 37973493 total (37638506 tlen-paired, 1985 hash-paired, 474 singletons, 10571 discordant, 321957 orphans, 9739 too large [>5000 bp], 15531177 duplicates)
Reads: 84308888 total, 50639 skipped (flags/unmapped)
Fragments: 42300325 total (41901389 tlen-paired, 4408 hash-paired, 283 singletons, 16011 discordant, 378234 orphans, 18058 too large [>5000 bp], 17695830 duplicates)
Reads: 85419739 total, 82877 skipped (flags/unmapped)
Fragments: 42975006 total (42034260 tlen-paired, 1972 hash-paired, 365 singletons, 182448 discordant, 755961 orphans, 71588 too large [>5000 bp], 17946370 duplicates)