Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6GU-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6GU-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6GU-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6GU-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74108730 total, 56048 skipped (flags/unmapped)
Fragments: 37190076 total (36818921 tlen-paired, 3002 hash-paired, 338 singletons, 12951 discordant, 354864 orphans, 13866 too large [>5000 bp], 15457641 duplicates)
Reads: 79225959 total, 50443 skipped (flags/unmapped)
Fragments: 39772011 total (39343229 tlen-paired, 7751 hash-paired, 330 singletons, 11617 discordant, 409084 orphans, 20454 too large [>5000 bp], 16535814 duplicates)
Reads: 78376685 total, 48043 skipped (flags/unmapped)
Fragments: 39341375 total (38957001 tlen-paired, 2186 hash-paired, 443 singletons, 9216 discordant, 372529 orphans, 9432 too large [>5000 bp], 15929405 duplicates)
Reads: 87450667 total, 81258 skipped (flags/unmapped)
Fragments: 44048534 total (42896857 tlen-paired, 3115 hash-paired, 316 singletons, 229911 discordant, 918335 orphans, 95496 too large [>5000 bp], 18281177 duplicates)