Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ZJT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZJT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_ZJT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_ZJT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75214487 total, 57434 skipped (flags/unmapped)
Fragments: 37736116 total (37380172 tlen-paired, 3124 hash-paired, 345 singletons, 14609 discordant, 337866 orphans, 11516 too large [>5000 bp], 16848110 duplicates)
Reads: 80419818 total, 49061 skipped (flags/unmapped)
Fragments: 40357201 total (39980318 tlen-paired, 2173 hash-paired, 445 singletons, 10359 discordant, 363906 orphans, 10353 too large [>5000 bp], 17502653 duplicates)
Reads: 89310829 total, 54349 skipped (flags/unmapped)
Fragments: 44815579 total (44366701 tlen-paired, 2897 hash-paired, 354 singletons, 15841 discordant, 429786 orphans, 27731 too large [>5000 bp], 20011781 duplicates)
Reads: 90347254 total, 82879 skipped (flags/unmapped)
Fragments: 45481246 total (44398184 tlen-paired, 3361 hash-paired, 359 singletons, 209446 discordant, 869896 orphans, 86069 too large [>5000 bp], 20294808 duplicates)