Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dRe-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dRe-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dRe-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dRe-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86304020 total, 57283 skipped (flags/unmapped)
Fragments: 43277483 total (42929348 tlen-paired, 2663 hash-paired, 510 singletons, 13199 discordant, 331763 orphans, 12022 too large [>5000 bp], 16477023 duplicates)
Reads: 81026845 total, 70249 skipped (flags/unmapped)
Fragments: 40629639 total (40276485 tlen-paired, 3716 hash-paired, 386 singletons, 19596 discordant, 329456 orphans, 13580 too large [>5000 bp], 15815286 duplicates)
Reads: 94938825 total, 64060 skipped (flags/unmapped)
Fragments: 47613739 total (47202798 tlen-paired, 3873 hash-paired, 362 singletons, 19311 discordant, 387395 orphans, 17522 too large [>5000 bp], 18575088 duplicates)
Reads: 95572662 total, 95092 skipped (flags/unmapped)
Fragments: 48041182 total (47119611 tlen-paired, 2115 hash-paired, 418 singletons, 173836 discordant, 745202 orphans, 70413 too large [>5000 bp], 18771190 duplicates)