Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_89H-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_89H-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_89H-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_89H-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66400976 total, 55488 skipped (flags/unmapped)
Fragments: 33302140 total (33002982 tlen-paired, 2807 hash-paired, 320 singletons, 15677 discordant, 280354 orphans, 10941 too large [>5000 bp], 13759912 duplicates)
Reads: 71369434 total, 47817 skipped (flags/unmapped)
Fragments: 35795968 total (35490188 tlen-paired, 2477 hash-paired, 393 singletons, 10902 discordant, 292008 orphans, 11041 too large [>5000 bp], 14394500 duplicates)
Reads: 79062037 total, 51537 skipped (flags/unmapped)
Fragments: 39655646 total (39286573 tlen-paired, 6199 hash-paired, 276 singletons, 16236 discordant, 346362 orphans, 22923 too large [>5000 bp], 16390091 duplicates)
Reads: 79852245 total, 81500 skipped (flags/unmapped)
Fragments: 40154685 total (39325871 tlen-paired, 4432 hash-paired, 400 singletons, 158113 discordant, 665869 orphans, 63822 too large [>5000 bp], 16583866 duplicates)