Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_6i-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83849571 total, 65724 skipped (flags/unmapped)
Fragments: 42016862 total (41717823 tlen-paired, 4661 hash-paired, 367 singletons, 19165 discordant, 274846 orphans, 12668 too large [>5000 bp], 16123995 duplicates)
Reads: 89376108 total, 53292 skipped (flags/unmapped)
Fragments: 44790094 total (44494816 tlen-paired, 3007 hash-paired, 445 singletons, 12757 discordant, 279069 orphans, 11071 too large [>5000 bp], 16849119 duplicates)
Reads: 89169893 total, 56223 skipped (flags/unmapped)
Fragments: 44694903 total (44358895 tlen-paired, 3566 hash-paired, 376 singletons, 15706 discordant, 316360 orphans, 20300 too large [>5000 bp], 17239615 duplicates)
Reads: 98699329 total, 91659 skipped (flags/unmapped)
Fragments: 49536688 total (48816726 tlen-paired, 3416 hash-paired, 436 singletons, 135950 discordant, 580160 orphans, 57445 too large [>5000 bp], 19160786 duplicates)