Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81308316 total, 59015 skipped (flags/unmapped)
Fragments: 40779940 total (40426752 tlen-paired, 2813 hash-paired, 364 singletons, 18860 discordant, 331151 orphans, 10468 too large [>5000 bp], 17603498 duplicates)
Reads: 86439717 total, 51816 skipped (flags/unmapped)
Fragments: 43353501 total (42993562 tlen-paired, 3464 hash-paired, 509 singletons, 12886 discordant, 343080 orphans, 12244 too large [>5000 bp], 18271620 duplicates)
Reads: 96321300 total, 57139 skipped (flags/unmapped)
Fragments: 48313044 total (47876195 tlen-paired, 5969 hash-paired, 349 singletons, 19665 discordant, 410866 orphans, 24644 too large [>5000 bp], 20914837 duplicates)
Reads: 97273700 total, 94532 skipped (flags/unmapped)
Fragments: 48904279 total (47938718 tlen-paired, 3915 hash-paired, 447 singletons, 183118 discordant, 778081 orphans, 74569 too large [>5000 bp], 21198541 duplicates)