Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_UMV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_UMV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_UMV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_UMV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71407365 total, 42421 skipped (flags/unmapped)
Fragments: 35780188 total (35558023 tlen-paired, 2316 hash-paired, 371 singletons, 9165 discordant, 210313 orphans, 7626 too large [>5000 bp], 13827780 duplicates)
Reads: 65635052 total, 52727 skipped (flags/unmapped)
Fragments: 32883158 total (32664810 tlen-paired, 2420 hash-paired, 319 singletons, 12433 discordant, 203176 orphans, 9752 too large [>5000 bp], 13061407 duplicates)
Reads: 71856682 total, 45459 skipped (flags/unmapped)
Fragments: 36005089 total (35765396 tlen-paired, 2405 hash-paired, 300 singletons, 10775 discordant, 226213 orphans, 13779 too large [>5000 bp], 14391439 duplicates)
Reads: 78591159 total, 73940 skipped (flags/unmapped)
Fragments: 39439188 total (38879632 tlen-paired, 2762 hash-paired, 329 singletons, 107953 discordant, 448512 orphans, 43842 too large [>5000 bp], 15797965 duplicates)