Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_234-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_234-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_234-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_234-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67237577 total, 51301 skipped (flags/unmapped)
Fragments: 33710401 total (33436977 tlen-paired, 2579 hash-paired, 310 singletons, 15613 discordant, 254922 orphans, 10353 too large [>5000 bp], 12741479 duplicates)
Reads: 71149278 total, 44497 skipped (flags/unmapped)
Fragments: 35670936 total (35400502 tlen-paired, 2721 hash-paired, 366 singletons, 10412 discordant, 256935 orphans, 10105 too large [>5000 bp], 13202301 duplicates)
Reads: 78519725 total, 50422 skipped (flags/unmapped)
Fragments: 39371719 total (39036205 tlen-paired, 3878 hash-paired, 301 singletons, 16679 discordant, 314656 orphans, 20411 too large [>5000 bp], 14910484 duplicates)
Reads: 79203586 total, 76941 skipped (flags/unmapped)
Fragments: 39791163 total (39097244 tlen-paired, 2414 hash-paired, 318 singletons, 129070 discordant, 562117 orphans, 53377 too large [>5000 bp], 15067273 duplicates)