Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_YXZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_YXZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YXZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YXZ-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71199071 total, 53646 skipped (flags/unmapped)
Fragments: 35706102 total (35398309 tlen-paired, 2278 hash-paired, 373 singletons, 17000 discordant, 288142 orphans, 10868 too large [>5000 bp], 14581782 duplicates)
Reads: 78098551 total, 47093 skipped (flags/unmapped)
Fragments: 39169172 total (38830579 tlen-paired, 4494 hash-paired, 288 singletons, 14673 discordant, 319138 orphans, 16270 too large [>5000 bp], 16091632 duplicates)
Reads: 77420347 total, 45217 skipped (flags/unmapped)
Fragments: 38829516 total (38513099 tlen-paired, 2066 hash-paired, 395 singletons, 11971 discordant, 301985 orphans, 9239 too large [>5000 bp], 15493814 duplicates)
Reads: 86235609 total, 74806 skipped (flags/unmapped)
Fragments: 43347849 total (42520997 tlen-paired, 1880 hash-paired, 340 singletons, 162415 discordant, 662217 orphans, 63831 too large [>5000 bp], 17835914 duplicates)