Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_63A-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_63A-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_63A-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_63A-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71763503 total, 56490 skipped (flags/unmapped)
Fragments: 35960283 total (35708292 tlen-paired, 3334 hash-paired, 255 singletons, 14930 discordant, 233472 orphans, 10087 too large [>5000 bp], 13512716 duplicates)
Reads: 83723678 total, 77568 skipped (flags/unmapped)
Fragments: 42025612 total (41410729 tlen-paired, 2234 hash-paired, 281 singletons, 112599 discordant, 499769 orphans, 47468 too large [>5000 bp], 15881833 duplicates)
Reads: 75381376 total, 45419 skipped (flags/unmapped)
Fragments: 37774990 total (37528964 tlen-paired, 3197 hash-paired, 339 singletons, 10342 discordant, 232148 orphans, 9232 too large [>5000 bp], 13837381 duplicates)
Reads: 83358283 total, 50439 skipped (flags/unmapped)
Fragments: 41775165 total (41478263 tlen-paired, 4034 hash-paired, 253 singletons, 15502 discordant, 277113 orphans, 17440 too large [>5000 bp], 15732493 duplicates)