Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7PV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7PV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_7PV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_7PV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 95805904 total, 74447 skipped (flags/unmapped)
Fragments: 48055113 total (47621316 tlen-paired, 4803 hash-paired, 458 singletons, 20833 discordant, 407703 orphans, 14696 too large [>5000 bp], 22099620 duplicates)
Reads: 101297339 total, 63823 skipped (flags/unmapped)
Fragments: 50815884 total (50369988 tlen-paired, 3148 hash-paired, 518 singletons, 14800 discordant, 427430 orphans, 14848 too large [>5000 bp], 22727418 duplicates)
Reads: 101883979 total, 68261 skipped (flags/unmapped)
Fragments: 51113883 total (50626999 tlen-paired, 6277 hash-paired, 428 singletons, 18521 discordant, 461658 orphans, 25019 too large [>5000 bp], 23483789 duplicates)
Reads: 112738477 total, 114763 skipped (flags/unmapped)
Fragments: 56700978 total (55486532 tlen-paired, 4686 hash-paired, 470 singletons, 236998 discordant, 972292 orphans, 97260 too large [>5000 bp], 26041219 duplicates)