Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cB6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cB6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cB6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cB6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86221400 total, 53021 skipped (flags/unmapped)
Fragments: 43232013 total (42897100 tlen-paired, 2877 hash-paired, 476 singletons, 13339 discordant, 318221 orphans, 11525 too large [>5000 bp], 17673793 duplicates)
Reads: 81361799 total, 66521 skipped (flags/unmapped)
Fragments: 40790950 total (40453529 tlen-paired, 4463 hash-paired, 348 singletons, 19480 discordant, 313130 orphans, 13428 too large [>5000 bp], 17061675 duplicates)
Reads: 87104284 total, 54989 skipped (flags/unmapped)
Fragments: 43679878 total (43295617 tlen-paired, 4311 hash-paired, 321 singletons, 16645 discordant, 362984 orphans, 26422 too large [>5000 bp], 18347678 duplicates)
Reads: 96567177 total, 87468 skipped (flags/unmapped)
Fragments: 48516062 total (47658945 tlen-paired, 1799 hash-paired, 361 singletons, 165465 discordant, 689492 orphans, 68719 too large [>5000 bp], 20420206 duplicates)