Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6TD-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6TD-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6TD-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6TD-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70779745 total, 55444 skipped (flags/unmapped)
Fragments: 35521424 total (35162303 tlen-paired, 2602 hash-paired, 336 singletons, 14326 discordant, 341857 orphans, 11823 too large [>5000 bp], 14926694 duplicates)
Reads: 74241887 total, 45091 skipped (flags/unmapped)
Fragments: 37266917 total (36899163 tlen-paired, 2506 hash-paired, 451 singletons, 9872 discordant, 354925 orphans, 9169 too large [>5000 bp], 15251694 duplicates)
Reads: 82740818 total, 52048 skipped (flags/unmapped)
Fragments: 41527973 total (41110289 tlen-paired, 2757 hash-paired, 366 singletons, 14077 discordant, 400484 orphans, 16837 too large [>5000 bp], 17431308 duplicates)
Reads: 84798495 total, 82711 skipped (flags/unmapped)
Fragments: 42709585 total (41617530 tlen-paired, 2761 hash-paired, 407 singletons, 214606 discordant, 874281 orphans, 85651 too large [>5000 bp], 17809751 duplicates)