Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0IY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0IY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0IY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0IY-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76760032 total, 62228 skipped (flags/unmapped)
Fragments: 38493012 total (38162752 tlen-paired, 3305 hash-paired, 357 singletons, 17989 discordant, 308609 orphans, 10373 too large [>5000 bp], 15755203 duplicates)
Reads: 82325099 total, 56050 skipped (flags/unmapped)
Fragments: 41286377 total (40917848 tlen-paired, 4934 hash-paired, 325 singletons, 15540 discordant, 347730 orphans, 22175 too large [>5000 bp], 16897372 duplicates)
Reads: 81935822 total, 51189 skipped (flags/unmapped)
Fragments: 41090519 total (40756239 tlen-paired, 2587 hash-paired, 434 singletons, 12824 discordant, 318435 orphans, 11232 too large [>5000 bp], 16384574 duplicates)
Reads: 91086256 total, 81841 skipped (flags/unmapped)
Fragments: 45780987 total (44916100 tlen-paired, 1904 hash-paired, 396 singletons, 166816 discordant, 695771 orphans, 69304 too large [>5000 bp], 18769538 duplicates)