Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BOVO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BOVO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BOVO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOVO-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81913671 total, 53817 skipped (flags/unmapped)
Fragments: 41057428 total (40742287 tlen-paired, 4723 hash-paired, 358 singletons, 15252 discordant, 294808 orphans, 20082 too large [>5000 bp], 16010816 duplicates)
Reads: 76891546 total, 60167 skipped (flags/unmapped)
Fragments: 38537459 total (38250187 tlen-paired, 3517 hash-paired, 383 singletons, 17828 discordant, 265544 orphans, 11194 too large [>5000 bp], 15025479 duplicates)
Reads: 82746779 total, 52036 skipped (flags/unmapped)
Fragments: 41471610 total (41184840 tlen-paired, 2875 hash-paired, 458 singletons, 12204 discordant, 271233 orphans, 11607 too large [>5000 bp], 15749016 duplicates)
Reads: 90765556 total, 87013 skipped (flags/unmapped)
Fragments: 45566413 total (44861031 tlen-paired, 3121 hash-paired, 398 singletons, 134020 discordant, 567843 orphans, 56979 too large [>5000 bp], 17786534 duplicates)