Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_d0V-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_d0V-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_d0V-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_d0V-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80665507 total, 64078 skipped (flags/unmapped)
Fragments: 40426460 total (40131556 tlen-paired, 2623 hash-paired, 455 singletons, 16702 discordant, 275124 orphans, 12044 too large [>5000 bp], 16158848 duplicates)
Reads: 88076676 total, 52094 skipped (flags/unmapped)
Fragments: 44145492 total (43845686 tlen-paired, 2172 hash-paired, 450 singletons, 11944 discordant, 285240 orphans, 9644 too large [>5000 bp], 17299055 duplicates)
Reads: 88296354 total, 55085 skipped (flags/unmapped)
Fragments: 44256781 total (43918609 tlen-paired, 3220 hash-paired, 305 singletons, 14537 discordant, 320110 orphans, 24061 too large [>5000 bp], 17828254 duplicates)
Reads: 97590674 total, 93570 skipped (flags/unmapped)
Fragments: 48998879 total (48224971 tlen-paired, 2470 hash-paired, 378 singletons, 150428 discordant, 620632 orphans, 60178 too large [>5000 bp], 19773150 duplicates)