Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5WB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5WB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5WB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5WB-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58488849 total, 46051 skipped (flags/unmapped)
Fragments: 29381201 total (29026767 tlen-paired, 3661 hash-paired, 305 singletons, 10387 discordant, 340081 orphans, 10391 too large [>5000 bp], 12235546 duplicates)
Reads: 61922583 total, 36948 skipped (flags/unmapped)
Fragments: 31117465 total (30741935 tlen-paired, 1558 hash-paired, 351 singletons, 7153 discordant, 366468 orphans, 8762 too large [>5000 bp], 12602157 duplicates)
Reads: 67652356 total, 43446 skipped (flags/unmapped)
Fragments: 33991756 total (33562473 tlen-paired, 8585 hash-paired, 300 singletons, 10140 discordant, 410258 orphans, 17978 too large [>5000 bp], 14100120 duplicates)
Reads: 69166413 total, 68884 skipped (flags/unmapped)
Fragments: 34928820 total (33748296 tlen-paired, 2335 hash-paired, 365 singletons, 232432 discordant, 945392 orphans, 92823 too large [>5000 bp], 14405024 duplicates)