Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cwv-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cwv-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cwv-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cwv-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65749918 total, 58238 skipped (flags/unmapped)
Fragments: 33023299 total (32630899 tlen-paired, 3001 hash-paired, 345 singletons, 14083 discordant, 374971 orphans, 10199 too large [>5000 bp], 14930390 duplicates)
Reads: 69349083 total, 49717 skipped (flags/unmapped)
Fragments: 34837390 total (34432218 tlen-paired, 2506 hash-paired, 429 singletons, 9374 discordant, 392863 orphans, 8939 too large [>5000 bp], 15359070 duplicates)
Reads: 77088421 total, 55256 skipped (flags/unmapped)
Fragments: 38721179 total (38242239 tlen-paired, 6312 hash-paired, 254 singletons, 14505 discordant, 457869 orphans, 24465 too large [>5000 bp], 17475233 duplicates)
Reads: 78235187 total, 88633 skipped (flags/unmapped)
Fragments: 39472206 total (38228942 tlen-paired, 3241 hash-paired, 363 singletons, 243733 discordant, 995927 orphans, 99216 too large [>5000 bp], 17707807 duplicates)