Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6ED-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ED-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ED-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ED-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66009959 total, 52591 skipped (flags/unmapped)
Fragments: 33087754 total (32833660 tlen-paired, 3060 hash-paired, 316 singletons, 13380 discordant, 237338 orphans, 9757 too large [>5000 bp], 14017376 duplicates)
Reads: 70705326 total, 43775 skipped (flags/unmapped)
Fragments: 35447491 total (35183425 tlen-paired, 2922 hash-paired, 459 singletons, 9107 discordant, 251578 orphans, 9303 too large [>5000 bp], 14644886 duplicates)
Reads: 79188870 total, 49791 skipped (flags/unmapped)
Fragments: 39698375 total (39395268 tlen-paired, 3074 hash-paired, 307 singletons, 13452 discordant, 286274 orphans, 14455 too large [>5000 bp], 16871588 duplicates)
Reads: 79619675 total, 76836 skipped (flags/unmapped)
Fragments: 40004280 total (39292070 tlen-paired, 2849 hash-paired, 331 singletons, 136344 discordant, 572686 orphans, 53648 too large [>5000 bp], 17010830 duplicates)