Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3OP-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3OP-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3OP-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3OP-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75443026 total, 55429 skipped (flags/unmapped)
Fragments: 37823198 total (37519276 tlen-paired, 2686 hash-paired, 301 singletons, 17867 discordant, 283068 orphans, 12285 too large [>5000 bp], 14742790 duplicates)
Reads: 78982622 total, 47876 skipped (flags/unmapped)
Fragments: 39599467 total (39301181 tlen-paired, 2543 hash-paired, 452 singletons, 12055 discordant, 283236 orphans, 9750 too large [>5000 bp], 15084769 duplicates)
Reads: 87541346 total, 54994 skipped (flags/unmapped)
Fragments: 43893521 total (43538939 tlen-paired, 4506 hash-paired, 358 singletons, 18176 discordant, 331542 orphans, 15605 too large [>5000 bp], 17127036 duplicates)
Reads: 88256321 total, 85503 skipped (flags/unmapped)
Fragments: 44337226 total (43565326 tlen-paired, 2899 hash-paired, 316 singletons, 143437 discordant, 625248 orphans, 60965 too large [>5000 bp], 17335258 duplicates)