Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_WPT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_WPT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_WPT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_WPT-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79247318 total, 44964 skipped (flags/unmapped)
Fragments: 39724377 total (39445443 tlen-paired, 2026 hash-paired, 464 singletons, 10468 discordant, 265976 orphans, 10020 too large [>5000 bp], 16192392 duplicates)
Reads: 74759177 total, 54780 skipped (flags/unmapped)
Fragments: 37472086 total (37194652 tlen-paired, 3117 hash-paired, 359 singletons, 15574 discordant, 258384 orphans, 9484 too large [>5000 bp], 15654131 duplicates)
Reads: 89171571 total, 81937 skipped (flags/unmapped)
Fragments: 44780241 total (44056169 tlen-paired, 3945 hash-paired, 379 singletons, 135549 discordant, 584199 orphans, 56865 too large [>5000 bp], 18778856 duplicates)
Reads: 88536075 total, 53063 skipped (flags/unmapped)
Fragments: 44379518 total (44045571 tlen-paired, 3477 hash-paired, 340 singletons, 16148 discordant, 313982 orphans, 19149 too large [>5000 bp], 18582738 duplicates)