Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6V6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_6V6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6V6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_6V6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 51922856 total, 40501 skipped (flags/unmapped)
Fragments: 26032682 total (25816788 tlen-paired, 2566 hash-paired, 238 singletons, 11977 discordant, 201113 orphans, 9171 too large [>5000 bp], 10106677 duplicates)
Reads: 55393558 total, 37088 skipped (flags/unmapped)
Fragments: 27775584 total (27532626 tlen-paired, 4774 hash-paired, 198 singletons, 10194 discordant, 227792 orphans, 16646 too large [>5000 bp], 10773021 duplicates)
Reads: 60955287 total, 57660 skipped (flags/unmapped)
Fragments: 30628654 total (30071790 tlen-paired, 1939 hash-paired, 274 singletons, 106234 discordant, 448417 orphans, 44505 too large [>5000 bp], 11894248 duplicates)
Reads: 55358547 total, 33954 skipped (flags/unmapped)
Fragments: 27758159 total (27539932 tlen-paired, 1704 hash-paired, 280 singletons, 8830 discordant, 207413 orphans, 7984 too large [>5000 bp], 10457151 duplicates)