Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_Dl-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Dl-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Dl-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Dl-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79099545 total, 68042 skipped (flags/unmapped)
Fragments: 39672223 total (39307008 tlen-paired, 4056 hash-paired, 320 singletons, 23226 discordant, 337613 orphans, 12495 too large [>5000 bp], 17219514 duplicates)
Reads: 85035574 total, 56491 skipped (flags/unmapped)
Fragments: 42649470 total (42288241 tlen-paired, 2969 hash-paired, 387 singletons, 16061 discordant, 341812 orphans, 11171 too large [>5000 bp], 18288168 duplicates)
Reads: 95492519 total, 98064 skipped (flags/unmapped)
Fragments: 47994665 total (47095523 tlen-paired, 3487 hash-paired, 359 singletons, 167912 discordant, 727384 orphans, 66434 too large [>5000 bp], 21149553 duplicates)
Reads: 94695618 total, 59824 skipped (flags/unmapped)
Fragments: 47497541 total (47061549 tlen-paired, 2661 hash-paired, 313 singletons, 24103 discordant, 408915 orphans, 24970 too large [>5000 bp], 20871251 duplicates)