Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8A3-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8A3-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8A3-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8A3-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79230253 total, 56771 skipped (flags/unmapped)
Fragments: 39702762 total (39431556 tlen-paired, 3161 hash-paired, 372 singletons, 16857 discordant, 250816 orphans, 9573 too large [>5000 bp], 16554163 duplicates)
Reads: 84659303 total, 46223 skipped (flags/unmapped)
Fragments: 42425154 total (42155116 tlen-paired, 1926 hash-paired, 381 singletons, 11334 discordant, 256397 orphans, 9775 too large [>5000 bp], 17202042 duplicates)
Reads: 85523079 total, 50590 skipped (flags/unmapped)
Fragments: 42859168 total (42564580 tlen-paired, 3296 hash-paired, 321 singletons, 13773 discordant, 277198 orphans, 15836 too large [>5000 bp], 17923195 duplicates)
Reads: 94245665 total, 81761 skipped (flags/unmapped)
Fragments: 47300601 total (46633163 tlen-paired, 1871 hash-paired, 431 singletons, 126609 discordant, 538527 orphans, 50830 too large [>5000 bp], 19845026 duplicates)