Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_OV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OV-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67685621 total, 55412 skipped (flags/unmapped)
Fragments: 33963209 total (33633172 tlen-paired, 3221 hash-paired, 395 singletons, 13897 discordant, 312524 orphans, 8355 too large [>5000 bp], 15141401 duplicates)
Reads: 72710780 total, 49861 skipped (flags/unmapped)
Fragments: 36487490 total (36137975 tlen-paired, 3177 hash-paired, 446 singletons, 9383 discordant, 336509 orphans, 11447 too large [>5000 bp], 15925450 duplicates)
Reads: 80478673 total, 51965 skipped (flags/unmapped)
Fragments: 40386057 total (39979824 tlen-paired, 3967 hash-paired, 300 singletons, 13648 discordant, 388318 orphans, 21606 too large [>5000 bp], 18040802 duplicates)
Reads: 81898019 total, 90561 skipped (flags/unmapped)
Fragments: 41229060 total (40221039 tlen-paired, 3073 hash-paired, 379 singletons, 197636 discordant, 806933 orphans, 78325 too large [>5000 bp], 18333413 duplicates)