Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8DK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8DK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8DK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8DK-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76349842 total, 56668 skipped (flags/unmapped)
Fragments: 38267025 total (37990391 tlen-paired, 2711 hash-paired, 393 singletons, 15903 discordant, 257627 orphans, 8572 too large [>5000 bp], 14822653 duplicates)
Reads: 81366158 total, 47538 skipped (flags/unmapped)
Fragments: 40781603 total (40505911 tlen-paired, 2426 hash-paired, 412 singletons, 10806 discordant, 262048 orphans, 8937 too large [>5000 bp], 15416192 duplicates)
Reads: 81453248 total, 52951 skipped (flags/unmapped)
Fragments: 40827556 total (40524465 tlen-paired, 3306 hash-paired, 353 singletons, 13792 discordant, 285640 orphans, 15589 too large [>5000 bp], 15867705 duplicates)
Reads: 89808490 total, 80724 skipped (flags/unmapped)
Fragments: 45092068 total (44389216 tlen-paired, 3602 hash-paired, 350 singletons, 134074 discordant, 564826 orphans, 54403 too large [>5000 bp], 17583245 duplicates)