Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_G9R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_G9R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_G9R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G9R-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64168112 total, 48298 skipped (flags/unmapped)
Fragments: 32163141 total (31925734 tlen-paired, 2884 hash-paired, 323 singletons, 11435 discordant, 222765 orphans, 8310 too large [>5000 bp], 12670455 duplicates)
Reads: 70162239 total, 40589 skipped (flags/unmapped)
Fragments: 35170970 total (34923145 tlen-paired, 1901 hash-paired, 357 singletons, 8374 discordant, 237193 orphans, 8630 too large [>5000 bp], 13502671 duplicates)
Reads: 70196302 total, 42618 skipped (flags/unmapped)
Fragments: 35194130 total (34907942 tlen-paired, 1837 hash-paired, 247 singletons, 10711 discordant, 273393 orphans, 19532 too large [>5000 bp], 13927024 duplicates)
Reads: 77429477 total, 70838 skipped (flags/unmapped)
Fragments: 38891951 total (38225908 tlen-paired, 2702 hash-paired, 282 singletons, 130256 discordant, 532803 orphans, 53911 too large [>5000 bp], 15424883 duplicates)