Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_2P4-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_2P4-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_2P4-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2P4-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62370338 total, 44611 skipped (flags/unmapped)
Fragments: 31257390 total (31040508 tlen-paired, 2560 hash-paired, 317 singletons, 11745 discordant, 202260 orphans, 6762 too large [>5000 bp], 11426723 duplicates)
Reads: 66145709 total, 39171 skipped (flags/unmapped)
Fragments: 33148512 total (32929173 tlen-paired, 2467 hash-paired, 293 singletons, 7712 discordant, 208867 orphans, 9337 too large [>5000 bp], 11799741 duplicates)
Reads: 73431224 total, 68307 skipped (flags/unmapped)
Fragments: 36872314 total (36290237 tlen-paired, 1168 hash-paired, 285 singletons, 109022 discordant, 471602 orphans, 45088 too large [>5000 bp], 13495863 duplicates)
Reads: 72890417 total, 42787 skipped (flags/unmapped)
Fragments: 36531629 total (36263708 tlen-paired, 4240 hash-paired, 256 singletons, 11529 discordant, 251896 orphans, 18262 too large [>5000 bp], 13347573 duplicates)