Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_617-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_617-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_617-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_617-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58365995 total, 47086 skipped (flags/unmapped)
Fragments: 29317844 total (28967979 tlen-paired, 3461 hash-paired, 392 singletons, 10009 discordant, 336003 orphans, 9808 too large [>5000 bp], 13003720 duplicates)
Reads: 60997700 total, 41921 skipped (flags/unmapped)
Fragments: 30646902 total (30280319 tlen-paired, 2394 hash-paired, 374 singletons, 7164 discordant, 356651 orphans, 9500 too large [>5000 bp], 13204973 duplicates)
Reads: 70012594 total, 71086 skipped (flags/unmapped)
Fragments: 35343654 total (34173232 tlen-paired, 2721 hash-paired, 340 singletons, 233045 discordant, 934316 orphans, 94428 too large [>5000 bp], 15523252 duplicates)
Reads: 68268839 total, 44567 skipped (flags/unmapped)
Fragments: 34300604 total (33873566 tlen-paired, 4901 hash-paired, 251 singletons, 9827 discordant, 412059 orphans, 17687 too large [>5000 bp], 15171749 duplicates)