Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_Dd-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Dd-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Dd-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_Dd-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75927996 total, 62819 skipped (flags/unmapped)
Fragments: 38050409 total (37770720 tlen-paired, 4328 hash-paired, 361 singletons, 14938 discordant, 260062 orphans, 12391 too large [>5000 bp], 16117855 duplicates)
Reads: 81650823 total, 51532 skipped (flags/unmapped)
Fragments: 40931123 total (40600435 tlen-paired, 2616 hash-paired, 273 singletons, 13651 discordant, 314148 orphans, 25733 too large [>5000 bp], 17403042 duplicates)
Reads: 81231692 total, 46943 skipped (flags/unmapped)
Fragments: 40717351 total (40433772 tlen-paired, 2580 hash-paired, 423 singletons, 10236 discordant, 270340 orphans, 10405 too large [>5000 bp], 16788371 duplicates)
Reads: 90579555 total, 86100 skipped (flags/unmapped)
Fragments: 45484865 total (44742764 tlen-paired, 2878 hash-paired, 353 singletons, 144430 discordant, 594440 orphans, 59259 too large [>5000 bp], 19385593 duplicates)