Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dwi-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dwi-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dwi-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dwi-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68399955 total, 57341 skipped (flags/unmapped)
Fragments: 34298210 total (34005454 tlen-paired, 2420 hash-paired, 341 singletons, 15766 discordant, 274229 orphans, 10382 too large [>5000 bp], 14763427 duplicates)
Reads: 74029260 total, 49350 skipped (flags/unmapped)
Fragments: 37120391 total (36822884 tlen-paired, 2995 hash-paired, 442 singletons, 10444 discordant, 283626 orphans, 11598 too large [>5000 bp], 15597662 duplicates)
Reads: 81853344 total, 53078 skipped (flags/unmapped)
Fragments: 41048588 total (40683997 tlen-paired, 3583 hash-paired, 270 singletons, 16736 discordant, 344002 orphans, 23681 too large [>5000 bp], 17757090 duplicates)
Reads: 83540083 total, 84161 skipped (flags/unmapped)
Fragments: 41986849 total (41191024 tlen-paired, 2599 hash-paired, 346 singletons, 152876 discordant, 640004 orphans, 61287 too large [>5000 bp], 18136385 duplicates)