Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_47P-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_47P-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_47P-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_47P-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78916302 total, 61119 skipped (flags/unmapped)
Fragments: 39542842 total (39269402 tlen-paired, 3525 hash-paired, 332 singletons, 14400 discordant, 255183 orphans, 12507 too large [>5000 bp], 15710753 duplicates)
Reads: 85282502 total, 49417 skipped (flags/unmapped)
Fragments: 42737225 total (42463337 tlen-paired, 2794 hash-paired, 374 singletons, 9581 discordant, 261139 orphans, 10074 too large [>5000 bp], 16629269 duplicates)
Reads: 94594772 total, 82778 skipped (flags/unmapped)
Fragments: 47494025 total (46766134 tlen-paired, 3076 hash-paired, 374 singletons, 137063 discordant, 587378 orphans, 55848 too large [>5000 bp], 19027593 duplicates)
Reads: 93675876 total, 52775 skipped (flags/unmapped)
Fragments: 46950869 total (46616028 tlen-paired, 5963 hash-paired, 328 singletons, 15213 discordant, 313337 orphans, 17514 too large [>5000 bp], 18753564 duplicates)