Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_29M-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_29M-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_29M-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_29M-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80980200 total, 61247 skipped (flags/unmapped)
Fragments: 40614180 total (40258811 tlen-paired, 3470 hash-paired, 407 singletons, 19454 discordant, 332038 orphans, 11519 too large [>5000 bp], 17415984 duplicates)
Reads: 88550828 total, 57741 skipped (flags/unmapped)
Fragments: 44416173 total (44016795 tlen-paired, 5312 hash-paired, 344 singletons, 17411 discordant, 376311 orphans, 18698 too large [>5000 bp], 19172989 duplicates)
Reads: 98471443 total, 89546 skipped (flags/unmapped)
Fragments: 49495707 total (48547729 tlen-paired, 3478 hash-paired, 376 singletons, 185441 discordant, 758683 orphans, 74771 too large [>5000 bp], 21362793 duplicates)
Reads: 88358080 total, 53949 skipped (flags/unmapped)
Fragments: 44315038 total (43949329 tlen-paired, 2876 hash-paired, 481 singletons, 13912 discordant, 348440 orphans, 11488 too large [>5000 bp], 18469555 duplicates)