Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_16D-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_16D-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_16D-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_16D-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66482732 total, 62257 skipped (flags/unmapped)
Fragments: 33360471 total (33024985 tlen-paired, 3427 hash-paired, 364 singletons, 13820 discordant, 317875 orphans, 8886 too large [>5000 bp], 14931546 duplicates)
Reads: 71154150 total, 49599 skipped (flags/unmapped)
Fragments: 35712574 total (35358480 tlen-paired, 2501 hash-paired, 396 singletons, 9102 discordant, 342095 orphans, 10947 too large [>5000 bp], 15492407 duplicates)
Reads: 79101734 total, 88649 skipped (flags/unmapped)
Fragments: 39837283 total (38811644 tlen-paired, 3673 hash-paired, 392 singletons, 198787 discordant, 822787 orphans, 80849 too large [>5000 bp], 17729250 duplicates)
Reads: 78080183 total, 54911 skipped (flags/unmapped)
Fragments: 39187757 total (38792524 tlen-paired, 4210 hash-paired, 340 singletons, 12735 discordant, 377948 orphans, 14023 too large [>5000 bp], 17492749 duplicates)