Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bua-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bua-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bua-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bua-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73957832 total, 55824 skipped (flags/unmapped)
Fragments: 37052573 total (36815130 tlen-paired, 2644 hash-paired, 269 singletons, 12643 discordant, 221887 orphans, 9509 too large [>5000 bp], 14858282 duplicates)
Reads: 79729165 total, 45561 skipped (flags/unmapped)
Fragments: 39949272 total (39705551 tlen-paired, 2500 hash-paired, 413 singletons, 8951 discordant, 231857 orphans, 8665 too large [>5000 bp], 15689112 duplicates)
Reads: 89279577 total, 81250 skipped (flags/unmapped)
Fragments: 44810138 total (44161154 tlen-paired, 3436 hash-paired, 338 singletons, 122787 discordant, 522423 orphans, 50406 too large [>5000 bp], 18140186 duplicates)
Reads: 88374213 total, 49396 skipped (flags/unmapped)
Fragments: 44281236 total (43985212 tlen-paired, 2583 hash-paired, 282 singletons, 12706 discordant, 280453 orphans, 21540 too large [>5000 bp], 17886381 duplicates)